Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs113642700 chr7:1105654 C/T 0.000262 173 25.87 24.95 49.58 KM Plot
PCPG rs113656186 chr17:74700236 T/C 0.000168 177 25.97 19.57 13.5 KM Plot
PCPG rs113664491 chr2:2743986 TGAG/T 3.49E-5 173 25.6 23.43 21.68 KM Plot
PCPG rs113680450 chr14:74645271 G/A 0.000221 176 25.28 26.57 10.57 KM Plot
PCPG rs11369847 chr4:78948974 A/AG 4.92E-5 174 39 25.43 25.47 KM Plot
PCPG rs113705040 chr20:6008115 G/A 0 177 25.47 23.08 2.93 KM Plot
PCPG rs113738647 chr17:65777816 CA/CAA 0.000476 171 24.85 34.37 8.22 KM Plot
PCPG rs113769187 chr2:242529953 T/G 4.87E-11 176 25.87 24.7 10.3 KM Plot
PCPG rs113771837 chr7:158875073 G/A 0 176 25.28 41.8 3.17 KM Plot
PCPG rs113775385 chr16:71453423 C/T 0.000124 178 24.52 26.65 43.12 KM Plot
PCPG rs11378972 chr16:87318563 C/CA 0.000144 170 23.53 29.13 3.17 KM Plot
PCPG rs113813244 chr20:6023390 C/T 0 178 25.53 23.08 2.93 KM Plot
PCPG rs11381342 chr6:123124049 A/AG 2.98E-6 176 8.67 27.23 24.85 KM Plot
PCPG rs11383891 chr16:89574595 C/CA 0.000356 176 26.78 25.28 19.53 KM Plot
PCPG rs113851179 chr16:1733479 C/CT 0 173 25.6 15.85 2.93 KM Plot